PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15967_iso_2
Common NameMYC5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 321aa    MW: 35433.4 Da    PI: 5.1951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15967_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.5e-16150196455
                                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                            hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  cra_locus_15967_iso_2_len_1371_ver_3 150 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 196
                                           6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-20143206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-20143206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-17149200No hitNo description
PfamPF000101.9E-13150196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MANMHGGPNR SSTSSSSVPT DLDDFSLFLH QIMLRSSSTS SSVPKANDGQ SFGFGPTNNL  60
QPDQDIRFSV PTRIPLSGSC VGFTSGSGAW LPGETAVNNV SSSSMNSVDN NELNEYDCES  120
EEGLEGLILE APAKPTTSRN PSKRSRAAEV HNLSEKRRRS RINEKMKALQ NLIPNSNKTD  180
KASMLDEAIE YLKQLQLQVQ MLTMRNGVSL YPVCLPGVLQ PNEISHMRMG YHEGNRSLNE  240
NMARPIPLDH TNPTTNMLFT VPDHYPTQDQ TSVDNLRKLN DADTLELETT PQVHPQARSF  300
QLPPPVCSEV SQYDDNGKTE Q
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889819.18e-77PREDICTED: transcription factor SPATULA isoform X4
TrEMBLC7SBB80.0C7SBB8_CATRO; BHLH transcription factor MYC5
STRINGVIT_07s0031g00450.t017e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Publications ? help Back to Top
  1. Zhang H, et al.
    The basic helix-loop-helix transcription factor CrMYC2 controls the jasmonate-responsive expression of the ORCA genes that regulate alkaloid biosynthesis in Catharanthus roseus.
    Plant J., 2011. 67(1): p. 61-71
    [PMID:21401746]